What is Host Cell Protein?

Host cell proteins, or HCPs, are protein impurities (in the context of an advanced therapeutic) produced by the cells used to create biologic drugs. These proteins, though naturally occurring in the cells themselves, can end up in the final product, potentially impacting drug safety and effectiveness. For anyone involved in biopharmaceuticals or simply interested in how biologic drugs are made, understanding what HCPs are and how they’re managed is important. Let’s dive into what host cell proteins are, why they matter, and how they’re managed in the drug development process.

What Are Host Cell Proteins (HCPs)?

Host cell proteins are essentially by-products generated during the manufacturing of biologic drugs. These drugs, which include treatments for diseases like cancer and autoimmune disorders, are often made using cells from organisms like E. coli or Chinese Hamster Ovary (CHO) cells. While these cells produce the desired therapeutic proteins, they also produce their own natural proteins—HCPs—which can end up in the final product if not effectively removed.

Why Do Host Cell Proteins Matter?

Although most HCPs are harmless at low levels, even small amounts can cause unwanted effects in the human body. Potential risks include:

  • Toxicity: HCPs might have unintended biological effects if they interact with the body in unexpected ways.
  • Immunogenicity: Some HCPs can trigger immune responses, which can make the drug less effective or even harmful to the patient.

They can also negatively effect the shelf life or formulation of the drug, increasing the price of the drug to end-users and healthcare providers.

For these reasons, it’s essential for drug manufacturers to test for and remove as many HCPs as possible, ensuring the product is safe, effective and stable.

The Process of Host Cell Protein Analysis

How HCPs Are Measured

Analyzing host cell proteins is a critical part of quality control in biopharmaceutical production. By identifying and quantifying HCPs at various stages of drug production, manufacturers can meet safety standards and satisfy regulatory requirements set by bodies like the FDA and EMA.

Common methods for HCP analysis include:

  • ELISA (Enzyme-Linked Immunosorbent Assay): A highly sensitive technique that’s widely used to detect and measure HCP levels.
  • 2D Western Blotting: Used to confirm the presence of specific HCPs in the drug, often combined with other techniques for validation.
  • Mass Spectrometry (MS): Particularly useful for identifying low-abundance HCPs, mass spectrometry can detect a wide range of proteins with great accuracy.

2D host cell protein analysis

Challenges in HCP Analysis

While there are many tools for HCP analysis, each has its limitations. For example, ELISA is precise but may miss some proteins due to cross-reactivity and doesn’t provide any information on HCXP identification, while Western blotting is time-intensive. The complex nature of HCPs also means that certain HCPs can bind to the therapeutic protein, making it hard to separate them completely. Researchers often use multiple methods together to ensure accuracy.

Managing Host Cell Proteins in Biopharmaceutical Development

Risk Assessment and Control Strategies

To effectively manage HCPs, biopharmaceutical companies often implement a risk assessment strategy that takes into account:

  • Host Cell Type: Different cells, like E. coli or CHO cells, produce unique HCP profiles, each with specific risks.
  • Expression Method: HCPs vary based on how the protein is expressed (e.g., in the cytoplasm vs. periplasm).
  • Purification Process: Techniques like Protein A chromatography help remove HCPs but may not eliminate them entirely.

By understanding and monitoring these factors, companies can fine-tune their processes to reduce HCPs and ensure a safe final product.

FAQs About Host Cell Protein Analysis

What is Host Cell Protein Analysis?

Host cell protein analysis is the process of identifying and quantifying the proteins produced by the cells used in biologic drug production. This analysis is crucial for ensuring the final product is safe and free from unwanted protein impurities.

How Are Host Cell Proteins Removed?

HCPs are typically removed through various purification steps during the manufacturing process, like Protein A chromatography. However, some proteins may still bind to the therapeutic molecule, making them harder to remove. Multiple purification stages are often used to achieve a safe level of HCPs.

Why Are Host Cell Proteins a Risk in Biologics?

Host cell proteins can cause immune reactions or reduce drug effectiveness. They can also interact with the drug’s target in the body, potentially altering its intended effects. Managing these proteins helps ensure that biologics are both safe and effective.

How Does Totallab Help with Host Cell Protein Analysis?

Totallab provides advanced software solutions for automating the analysis of data from 2D Western Blot HCP analysis techniques. Their tools allow for easy visualization and interpretation of results from methods like Western blotting and ELISA, helping researchers quickly identify and address any HCP-related risks.

Is There a Standard Limit for HCPs in Biologics?

Yes, but it varies by product. Regulatory agencies like the FDA set acceptable levels of HCPs for each drug based on factors such as dosage and administration method. Each drug is evaluated on a case-by-case basis to determine a safe threshold for HCPs.


For drug developers, monitoring and controlling HCP levels is crucial to ensure safety and regulatory compliance. With advances in technologies like mass spectrometry and the support of companies like Totallab, the field of HCP analysis continues to improve, helping us produce safer, more effective biologic drugs.