SameSpots - Reference Papers
Our SameSpots software, which helps to resolve common challenges in 2-DE Proteomics research, has been in active development since 2008 and in that time has been cited numerous times in proteomics publications within the field. It has also been rigorously compared to other 2-DE analysis software by independent parties.
Here we share details of where our SameSpots software has been referenced. Feel free to review the below and if you’d like to try our software for yourself, you can request a free trial here.
| Title | Journal | Date | DOI | PMID |
| Proteomic landscape presents cues for vegetative to reproductive transition in mango | Journal of Applied Horticulture | 2023 | 10.37855/jah.2023.v25i01.01 | |
| Changes in the Saliva Proteome of Pigs with Diarrhoea Caused by Escherichia coli | Proteomes | 03/04/2023 | 10.3390/proteomes11020014 | 37092455 |
| Proteomics analysis of human breast milk by two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) coupled with mass spectrometry to assess breast cancer risk | Electrophoresis | 27/03/2023 | /10.1002/elps.202300040 | 36971330 |
| DIGE Analysis Software and Protein Identification Approaches. | Methods in molecular biology | 2023 | 10.1007/978-1-0716-2831-7_3 | 36378429 |
| Proteomic characterization of hydatid cyst fluid: two-dimensional electrophoresis (2-DE) setup through optimizing protein extraction | BMC research notes | 01/01/2021 | 10.1186/s13104-020-05433-3 | 33430965 |
| Spatial and Pregnancy-Related Changes in the Protein, Amino Acid, and Carbohydrate Composition of Bovine Oviduct Fluid | International Journal of Molecular Sciences | 29/02/2020 | 10.3390/ijms21051681 | 32121434 |
| Proteomic changes driven by urban pollution suggest particulate matter as a deregulator of energy metabolism, mitochondrial activity, and oxidative pathways in the rat brain | Science of The Total Environment | 15/10/2019 | 10.1016/j.scitotenv.2019.06.102 | 31412487 |
| Comparative Two-dimensional Gel Electrophoresis Maps for Amastigote-like Proteomes of Iranian Leishmania Tropica and Leishmania Major Isolates | Galen Medical Journal | 15/08/2019 | 10.31661/gmj.v8i0.1520 | 34466522 |
| Inverse changes in plasma tetranectin and titin levels in patients with type 2 diabetes mellitus: a potential predictor of acute myocardial infarction? | Acta Pharmacologica Sinica | 08/02/2018 | 10.1038/aps.2017.141 | 29417940 |
| Serum Proteomic Profiling of Obsessive-Compulsive Disorder, Washing Subtype: A Preliminary Study | Basic and Clinical Neuroscience | 01/07/2017 | 10.18869/nirp.bcn.8.4.307 | 29158881 |
| DIGE Analysis Software and Protein Identification Approaches | Methods in molecular biology | 11/10/2017 | 10.1007/978-1-4939-7268-5_4 | 29019123 |
| Proteomic Analysis of the Effect of Extremely Low-Frequency Electromagnetic Fields (ELF-EMF) With Different Intensities in SH-SY5Y Neuroblastoma Cell Line | journal of lasers in medical sciences | 28/03/2017 | 10.15171/jlms.2017.14 | 28652900 |
Mucin- and carbohydrate-stimulated adhesion and subproteome changes of the probiotic bacterium Lactobacillus acidophilus NCFM | Journal of Proteomics | 23/06/2017 | /10.1016/j.jprot.2017.05.015 | 28533178 |
| Proteomic variation and diversity in clinical Streptococcus pneumoniae isolates from invasive and non-invasive sites | PLoS One | 02/06/2017 | 10.1371/journal.pone.0179075 | 28575057 |
| Plant Polyphenols Stimulate Adhesion to Intestinal Mucosa and Induce Proteome Changes in the Probiotic Lactobacillus acidophilus NCFM | Molecular Nutrition & Food Research | 04/12/2017 | 10.1002/mnfr.201700638 | 29205785 |
| Comparative proteomics of oxidative stress response of Lactobacillus acidophilus NCFM reveals effects on DNA repair and cysteine de novo synthesis | Proteomics | 03/01/2017 | 10.1002/pmic.201600178 | 28045221 |
| Ethanol and Cancer Induce Similar Changes on Protein Expression Pattern of Human Fibroblast Cell | Iranian Journal of Pharmaceutical research | 01/12/2016 | 28228815 | |
| Differential proteome and cellular adhesion analyses of the probiotic bacterium Lactobacillus acidophilus NCFM grown on raffinose – an emerging prebiotic | Proteomics | 09/03/2016 | 10.1002/pmic.201500212 | 26959526 |
| The Effect of Weight Loss on the Muscle Proteome in the Damara, Dorper and Australian Merino Ovine Breeds | PLoS One | 01/02/2016 | 10.1371/journal.pone.0146367 | 26828937 |
| Peripheral blood mononuclear cell proteome changes in patients with myelodysplastic syndrome | BioMed Research International | 16/04/2016 | 10.1155/2015/872983 | 25969835 |
| The contribution of proteomics to understanding epididymal maturation of mammalian spermatozoa | Systems Biology in Reproductive Medicine | 12/07/2012 | 10.3109/19396368.2012.663233 | 22788532 |
| Maternal Smoking Dysregulates Protein Expression in Second Trimester Human Fetal Livers in a Sex-Specific Manner | Journal of Clinical Endocrinology and Metabolism | 24/05/2014 | 10.1210/jc.2014-3941 | 25803269 |
| Proteome profiling of lipopolysaccharide induced L6 rat skeletal muscle cells response to flavonoids from Scutellaria baicalensis Georgi | BMC Complementary Medicine and Therapies | 07/10/2014 | 10.1186/1472-6882-14-379 | 25287937 |
| Redox proteomics changes in the fungal pathogen Trichosporon asahii on arsenic exposure: identification of protein responses to metal-induced oxidative stress in an environmentally-sampled isolate | PLoS One | 25/06/2014 | 10.1371/journal.pone.0102340 | 25062082 |
| Proteome changes in the plasma of myelodysplastic syndrome patients with refractory anemia with excess blasts subtype 2 | Disease Markers | 25/05/2014 | 10.1155/2014/178709 | 24958999 |
| Comparative proteomics of Helicobacter species: the discrimination of gastric and enterohepatic Helicobacter species | Journal of Proteomics | 31/01/2014 | 10.1016/j.jprot.2013.07.016 | 23899588 |
| Two dimensional electrophoresis of the exo-proteome produced from community acquired methicillin resistant Staphylococcus aureus belonging to clonal complex 80 | Microbiological Research | 01/10/2013 | 10.1016/j.micres.2013.03.004 | 23566758 |
| Plasma proteome changes associated with refractory anemia and refractory anemia with ringed sideroblasts in patients with myelodysplastic syndrome | Proteome science | 08/04/2013 | 10.1186/1477-5956-11-14 | 23566303 |
| Proteomic expression of microfungal ripening starter Geotrichum candidum submitted to cold stress is strain-dependent: studies using 2D-DIGE technology and Samespots software analysis | Cryo letters | 22987240 | ||
| Proteomic analysis of human hippocampus shows differential protein expression in the different hippocampal subfields | Proteomics | 12/08/2012 | 10.1002/pmic.201200031 | 22707153 |
| Simplified platelet sample preparation for SDS-PAGE-based proteomic studies | Proteomics Clinical Applications | 06/08/2012 | 10.1002/prca.201100101 | 22641369 |
| Plasma protein alterations in the refractory anemia with excess blasts subtype 1 subgroup of myelodysplastic syndrome | Proteome science | 08/05/2012 | 10.1186/1477-5956-10-31 | 22568928 |
| Plasma proteome changes associated with refractory cytopenia with multilineage dysplasia | Proteome science | 05/10/2011 | 10.1186/1477-5956-9-64 | 21975265 |
| Changes in tear protein profile in keratoconus disease | Eye | 25/09/2011 | 10.1038/eye.2011.105 | 21701529 |
| Plasma proteome changes in cardiovascular disease patients: novel isoforms of apolipoprotein A1 | Journal of translational medicine | 01/06/2011 | 10.1186/1479-5876-9-84 | 21631938 |
| Proteome changes in platelets activated by arachidonic acid, collagen, and thrombin | Proteome science | 12/11/2010 | 10.1186/1477-5956-8-56 | 21073729 |
| Proteomics and pitfalls in the search for potential biomarkers of abdominal aortic aneurysms | Vascular | 01/09/2010 | 10.2310/6670.2010.00046 | 20822720 |
| In the Eye of the Beholder: Does the Master See the SameSpots as the Novice? | Journal of Proteome Research | 05/03/2010 | 10.1021/pr9010298 | 20108985 |
| Evaluating the performance of new approaches to spot quantification and differential expression in 2-dimensional gel electrophoresis studies | Journal of Proteome Research | 09/01/2010 | 10.1021/pr9005603 | 19919108 |
| Differential protein expression profiling of myocardial tissue in a mouse model of hypertrophic cardiomyopathy | Journal of molecular and cellular cardiology | 27/08/2009 | 10.1016/j.yjmcc.2009.08.015 | 19715700 |
| Comparison of three commercially available DIGE analysis software packages: minimal user intervention in gel-based proteomics | Journal of Proteome Research | 09/01/2009 | 10.1021/pr800588f | 19133722 |
| Quantitative 2-D gel electrophoresis-based expression proteomics of albumin and IgG immunodepleted plasma | The Journal of Chromatography B | 01/04/2008 | 10.1016/j.jchromb.2008.01.052 | 18325855 |
| Urinary Proteome Differences in Patients with Type 2 Diabetes Pre and Post Liraglutide Treatment | Current Issues in Molecular Biology | 06/02/2023 | https://doi.org/10.3390/cimb45020092 | |
| A characteristic N-glycopeptide signature associated with diabetic cognitive impairment identified in a longitudinal cohort study | Biochimica et Biophysica Acta (BBA) – General Subjects | https://doi.org/10.1016/j.bbagen.2023.130316 | 45017 | |
| Chronic Training Induces Metabolic and Proteomic Response in Male and Female Basketball Players: Salivary Modifications during In-Season Training Programs | Healthcare | https://doi.org/10.3390/healthcare11020241 | 44938 | |
| Proteomics investigation of human sera for determination of postoperative indicators of pulmonary cystic echinococcosis | Journal of Cardiothoracic Surgery | https://doi.org/10.1186/s13019-023-02109-4 | 44937 | |
| Discovery of a Missense Mutation (Q222K) of the APOE Gene from the Australian Imaging, Biomarker and Lifestyle Study | Journal of Alzheimer’s Disease Reports | 10.3233/ADR-220075 | 44958 | |
| Proteomic and Transcriptomic Analysis for Identification of Endosymbiotic Bacteria Associated with BYDV Transmission Efficiency by Sitobion miscanthi | Plants | https://doi.org/10.3390/plants11233352 | 44897 | |
| Renal FGF23 signaling depends on redox protein Memo1 and promotes orthovanadate-sensitive protein phosphotyrosyl phosphatase activity | Journal of Cell Communication and Signaling | https://doi.org/10.1007/s12079-022-00710-1 | 44890 |