SameSpots - Reference Papers

Our SameSpots software, which helps to resolve common challenges in 2-DE Proteomics research, has been in active development since 2008 and in that time has been cited numerous times in proteomics publications within the field. It has also been rigorously compared to other 2-DE analysis software by independent parties.

Here we share details of where our SameSpots software has been referenced. Feel free to review the below and if you’d like to try our software for yourself, you can request a free trial here.

Title Journal Date DOI PMID
Changes in the Saliva Proteome of Pigs with Diarrhoea Caused by Escherichia coli Proteomes 03/04/2023 10.3390/proteomes11020014 37092455
Proteomics analysis of human breast milk by two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) coupled with mass spectrometry to assess breast cancer risk Electrophoresis 27/03/2023 /10.1002/elps.202300040 36971330
DIGE Analysis Software and Protein Identification Approaches. Methods in molecular biology 2023 10.1007/978-1-0716-2831-7_3 36378429
Proteomic characterization of hydatid cyst fluid: two-dimensional electrophoresis (2-DE) setup through optimizing protein extraction BMC research notes 01/01/2021 10.1186/s13104-020-05433-3 33430965
Spatial and Pregnancy-Related Changes in the Protein, Amino Acid, and Carbohydrate Composition of Bovine Oviduct Fluid International Journal of Molecular Sciences 29/02/2020 10.3390/ijms21051681 32121434
Proteomic changes driven by urban pollution suggest particulate matter as a deregulator of energy metabolism, mitochondrial activity, and oxidative pathways in the rat brain Science of The Total Environment 15/10/2019 10.1016/j.scitotenv.2019.06.102 31412487
Comparative Two-dimensional Gel Electrophoresis Maps for Amastigote-like Proteomes of Iranian Leishmania Tropica and Leishmania Major Isolates Galen Medical Journal 15/08/2019 10.31661/gmj.v8i0.1520 34466522
Inverse changes in plasma tetranectin and titin levels in patients with type 2 diabetes mellitus: a potential predictor of acute myocardial infarction? Acta Pharmacologica Sinica 08/02/2018 10.1038/aps.2017.141 29417940
Serum Proteomic Profiling of Obsessive-Compulsive Disorder, Washing Subtype: A Preliminary Study Basic and Clinical Neuroscience 01/07/2017 10.18869/ 29158881
DIGE Analysis Software and Protein Identification Approaches Methods in molecular biology 11/10/2017 10.1007/978-1-4939-7268-5_4 29019123
Proteomic Analysis of the Effect of Extremely Low-Frequency Electromagnetic Fields (ELF-EMF) With Different Intensities in SH-SY5Y Neuroblastoma Cell Line journal of lasers in medical sciences 28/03/2017 10.15171/jlms.2017.14 28652900

Mucin- and carbohydrate-stimulated adhesion and subproteome changes of the probiotic bacterium Lactobacillus acidophilus NCFM

Journal of Proteomics 23/06/2017 /10.1016/j.jprot.2017.05.015 28533178
Proteomic variation and diversity in clinical Streptococcus pneumoniae isolates from invasive and non-invasive sites PLoS One 02/06/2017 10.1371/journal.pone.0179075 28575057
Plant Polyphenols Stimulate Adhesion to Intestinal Mucosa and Induce Proteome Changes in the Probiotic Lactobacillus acidophilus NCFM Molecular Nutrition & Food Research 04/12/2017 10.1002/mnfr.201700638 29205785
Comparative proteomics of oxidative stress response of Lactobacillus acidophilus NCFM reveals effects on DNA repair and cysteine de novo synthesis Proteomics 03/01/2017 10.1002/pmic.201600178 28045221
Ethanol and Cancer Induce Similar Changes on Protein Expression Pattern of Human Fibroblast Cell Iranian Journal of Pharmaceutical research 01/12/2016 28228815
Differential proteome and cellular adhesion analyses of the probiotic bacterium Lactobacillus acidophilus NCFM grown on raffinose – an emerging prebiotic Proteomics 09/03/2016 10.1002/pmic.201500212 26959526
The Effect of Weight Loss on the Muscle Proteome in the Damara, Dorper and Australian Merino Ovine Breeds PLoS One 01/02/2016 10.1371/journal.pone.0146367 26828937
Peripheral blood mononuclear cell proteome changes in patients with myelodysplastic syndrome BioMed Research International 16/04/2016 10.1155/2015/872983 25969835
The contribution of proteomics to understanding epididymal maturation of mammalian spermatozoa Systems Biology in Reproductive Medicine 12/07/2012 10.3109/19396368.2012.663233 22788532
Maternal Smoking Dysregulates Protein Expression in Second Trimester Human Fetal Livers in a Sex-Specific Manner Journal of Clinical Endocrinology and Metabolism 24/05/2014 10.1210/jc.2014-3941 25803269
Proteome profiling of lipopolysaccharide induced L6 rat skeletal muscle cells response to flavonoids from Scutellaria baicalensis Georgi BMC Complementary Medicine and Therapies 07/10/2014 10.1186/1472-6882-14-379 25287937
Redox proteomics changes in the fungal pathogen Trichosporon asahii on arsenic exposure: identification of protein responses to metal-induced oxidative stress in an environmentally-sampled isolate PLoS One 25/06/2014 10.1371/journal.pone.0102340 25062082
Proteome changes in the plasma of myelodysplastic syndrome patients with refractory anemia with excess blasts subtype 2 Disease Markers 25/05/2014 10.1155/2014/178709 24958999
Comparative proteomics of Helicobacter species: the discrimination of gastric and enterohepatic Helicobacter species Journal of Proteomics 31/01/2014 10.1016/j.jprot.2013.07.016 23899588
Two dimensional electrophoresis of the exo-proteome produced from community acquired methicillin resistant Staphylococcus aureus belonging to clonal complex 80 Microbiological Research 01/10/2013 10.1016/j.micres.2013.03.004 23566758
Plasma proteome changes associated with refractory anemia and refractory anemia with ringed sideroblasts in patients with myelodysplastic syndrome Proteome science 08/04/2013 10.1186/1477-5956-11-14 23566303
Proteomic expression of microfungal ripening starter Geotrichum candidum submitted to cold stress is strain-dependent: studies using 2D-DIGE technology and Samespots software analysis Cryo letters 22987240
Proteomic analysis of human hippocampus shows differential protein expression in the different hippocampal subfields Proteomics 12/08/2012 10.1002/pmic.201200031 22707153
Simplified platelet sample preparation for SDS-PAGE-based proteomic studies Proteomics Clinical Applications 06/08/2012 10.1002/prca.201100101 22641369
Plasma protein alterations in the refractory anemia with excess blasts subtype 1 subgroup of myelodysplastic syndrome Proteome science 08/05/2012 10.1186/1477-5956-10-31 22568928
Plasma proteome changes associated with refractory cytopenia with multilineage dysplasia Proteome science 05/10/2011 10.1186/1477-5956-9-64 21975265
Changes in tear protein profile in keratoconus disease Eye 25/09/2011  10.1038/eye.2011.105 21701529
Plasma proteome changes in cardiovascular disease patients: novel isoforms of apolipoprotein A1 Journal of translational medicine 01/06/2011 10.1186/1479-5876-9-84 21631938
Proteome changes in platelets activated by arachidonic acid, collagen, and thrombin Proteome science 12/11/2010 10.1186/1477-5956-8-56 21073729
Proteomics and pitfalls in the search for potential biomarkers of abdominal aortic aneurysms Vascular 01/09/2010 10.2310/6670.2010.00046 20822720
In the Eye of the Beholder: Does the Master See the SameSpots as the Novice? Journal of Proteome Research 05/03/2010 10.1021/pr9010298 20108985
Evaluating the performance of new approaches to spot quantification and differential expression in 2-dimensional gel electrophoresis studies Journal of Proteome Research 09/01/2010 10.1021/pr9005603 19919108
Differential protein expression profiling of myocardial tissue in a mouse model of hypertrophic cardiomyopathy Journal of molecular and cellular cardiology 27/08/2009 10.1016/j.yjmcc.2009.08.015 19715700
Comparison of three commercially available DIGE analysis software packages: minimal user intervention in gel-based proteomics Journal of Proteome Research 09/01/2009 10.1021/pr800588f 19133722
Quantitative 2-D gel electrophoresis-based expression proteomics of albumin and IgG immunodepleted plasma The Journal of Chromatography B 01/04/2008 10.1016/j.jchromb.2008.01.052 18325855
Urinary Proteome Differences in Patients with Type 2 Diabetes Pre and Post Liraglutide Treatment Current Issues in Molecular Biology 06/02/2023
A characteristic N-glycopeptide signature associated with diabetic cognitive impairment identified in a longitudinal cohort study Biochimica et Biophysica Acta (BBA) – General Subjects 45017
Chronic Training Induces Metabolic and Proteomic Response in Male and Female Basketball Players: Salivary Modifications during In-Season Training Programs Healthcare 44938
Proteomics investigation of human sera for determination of postoperative indicators of pulmonary cystic echinococcosis Journal of Cardiothoracic Surgery 44937
Discovery of a Missense Mutation (Q222K) of the APOE Gene from the Australian Imaging, Biomarker and Lifestyle Study Journal of Alzheimer’s Disease Reports 10.3233/ADR-220075 44958
Proteomic and Transcriptomic Analysis for Identification of Endosymbiotic Bacteria Associated with BYDV Transmission Efficiency by Sitobion miscanthi Plants 44897
Renal FGF23 signaling depends on redox protein Memo1 and promotes orthovanadate-sensitive protein phosphotyrosyl phosphatase activity Journal of Cell Communication and Signaling 44890